The army took control of the Munak canal after Jat community protesters, angry at caste job quotas, seized it.
Keshav Chandra, head of Delhi's water board, told the BBC it would take "three to four days" before normal supplies resumed to affected areas.
All Delhi's schools have been closed because of the water crisis.
Sixteen people have been killed and hundreds hurt in three days of riots.
Sixteen million people live in Delhi, and around three-fifths of the city's water is supplied by the canal, which runs through the neighbouring state of Haryana.
Mr Chandra said that prior warnings meant that people had managed to save water, and tankers had been despatched to affected areas of the city, but that this would not be enough to make up for the shortfall.
The army took control of parts of the canal on Monday morning, but repairs are expected to take time.
The Jats are currently listed as upper caste but the demonstrators have been demanding inclusion in caste quotas for jobs and education opportunities that have been available to lower castes since 1991.
(BBC News)